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dc.contributor.authorBlande D
dc.contributor.authorHalimaa P
dc.contributor.authorTervahauta AI
dc.contributor.authorAarts MGM
dc.contributor.authorKärenlampi SO
dc.date.accessioned2017-11-30T13:53:46Z
dc.date.available2017-11-30T13:53:46Z
dc.date.issued2017
dc.identifier.urihttps://erepo.uef.fi/handle/123456789/5041
dc.description.abstractNoccaea caerulescens of the Brassicaceae family has become the key model plant among the metal hyperaccumulator plants. Populations/accessions of N. caerulescens from geographic locations with different soil metal concentrations differ in their ability to hyperaccumulate and hypertolerate metals. Comparison of transcriptomes in several accessions provides candidates for detailed exploration of the mechanisms of metal accumulation and tolerance and local adaptation. This can have implications in the development of plants for phytoremediation and improved mineral nutrition. Transcriptomes from root and shoot tissues of four N. caerulescens accessions with contrasting Zn, Cd and Ni hyperaccumulation and tolerance traits were sequenced with Illumina Hiseq2000. Transcriptomes were assembled using the Trinity de novo assembler and were annotated and the protein sequences predicted. The comparison against the BUSCO plant early release dataset indicated high-quality assemblies. The predicted protein sequences have been clustered into ortholog groups with closely related species. The data serve as important reference sequences in whole transcriptome studies, in analyses of genetic differences between the accessions and other species, and for primer design.en
dc.language.isoENen
dc.publisherSpringer Natureen
dc.relation.ispartofseriesScientific Dataen
dc.relation.urihttp://dx.doi.org/10.1038/sdata.2016.131en
dc.rightsCC BY http://creativecommons.org/licenses/by/4.0/en
dc.subjectAgricultural geneticsen
dc.subjectPlant geneticsen
dc.subjectRNA sequencingen
dc.subjectSequence annotationen
dc.titleDe novo transcriptome assemblies of four accessions of the metal hyperaccumulator plant Noccaea caerulescensen
dc.description.versionpublished versionen
dc.contributor.departmentYmpäristö- ja biotieteiden laitos / Toimintaen
uef.solecris.id44617365en
dc.type.publicationinfo:eu-repo/semantics/articleen
dc.rights.accessrights© Authorsen
dc.relation.doi10.1038/sdata.2016.131en
dc.description.reviewstatuspeerRevieweden
dc.publisher.countryBritanniaen
dc.relation.articlenumber160131en
dc.relation.issn2052-4463en
dc.relation.volume4en
dc.rights.accesslevelopenAccessen
dc.type.okmA1en
dc.type.versioninfo:eu-repo/semantics/publishedVersionen
uef.solecris.openaccessOpen access -julkaisukanavassa ilmestynyt julkaisu


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