Data from: Genetic diversity and genomic signatures of selection among cattle breeds from Siberia, eastern and northern Europe
Date
2017-06-01Author(s)
Unique identifier
doi:10.5061/dryad.nn5bnMetadata
Show full item recordResearch data
Citation
Iso-Touru, Terhi (Natural Resources Institute Finland). Tapio, Miika (Natural Resources Institute Finland). Vilkki, Johanna (Natural Resources Institute Finland). Kiseleva, Tatyana (Russian Academy of Sciences). Ammosov, Innokentyi (Board of Agricultural Office of Eveno-Bytantaj Region; Batagay-Alyta 678580 The Sakha Republic (Yakutsk) Russia). Ivanova, Zoya (Yakutian Research Institute of Agriculture; Yakutsk Sakha 677007 Russia). Popov, Ruslan (Yakutian Research Institute of Agriculture; Yakutsk Sakha 677007 Russia). Ozerov, Mikhail (Natural Resources Institute Finland). Kantanen, Juha (Natural Resources Institute Finland). , Data from: Genetic diversity and genomic signatures of selection among cattle breeds from Siberia, eastern and northern Europe, 2017, doi:10.5061/dryad.nn5bn.Licensed under
Abstract
Domestication in the near eastern region had a major impact on the gene pool of humpless taurine cattle (Bos taurus). As a result of subsequent natural and artificial selection, hundreds of different breeds have evolved, displaying a broad range of phenotypic traits. Here, 10 Eurasian B. taurus breeds from different biogeographic and production conditions, which exhibit different demographic histories and have been under artificial selection at various intensities, were investigated using the Illumina BovineSNP50 panel to understand their genetic diversity and population structure. In addition, we scanned genomes from eight breeds for signatures of diversifying selection. Our population structure analysis indicated six distinct breed groups, the most divergent being the Yakutian cattle from Siberia. Selection signals were shared (experimental P-value < 0.01) with more than four breeds on chromosomes 6, 7, 13, 16 and 22. The strongest selection signals in the Yakutian cattle were found on chromosomes 7 and 21, where a miRNA gene and genes related to immune system processes are respectively located. In general, genomic regions indicating selection overlapped with known QTL associated with milk production (e.g. on chromosome 19), reproduction (e.g. on chromosome 24) and meat quality (e.g. on chromosome 7). The selection map created in this study shows that native cattle breeds and their genetic resources represent unique material for future breeding.
Link to the original item
https://datadryad.org/stash/share/xTBEp_J7OpztLorFZyiyxbv1j1SCITTgpY4Bek4z6BsCollections
Related items
Showing items related by title, author, creator and subject.
-
Supplementary material 13 from: de Jong Y, Kouwenberg J, Boumans L, Hussey C, Hyam R, Nicolson N, Kirk P, Paton A, Michel E, Guiry M, Boegh P, Pedersen H, Enghoff H, von Raab-Straube E, Güntsch A, Geoffroy M, Müller A, Kohlbecker A, Berendsohn W, Appeltans W, Arvanitidis C, Vanhoorne B, Declerck J, Vandepitte L, Hernandez F, Nash R, Costello M, Ouvrard D, Bezard-Falgas P, Bourgoin T, Wetzel F, Glöckler F, Korb G, Ring C, Hagedorn G, Häuser C, Aktaç N, Asan A, Ardelean A, Borges P, Dhora D, Khachatryan H, Malicky M, Ibrahimov S, Tuzikov A, De Wever A, Moncheva S, Spassov N, Chobot K, Popov A, Boršić I, Sfenthourakis S, Kõljalg U, Uotila P, Olivier G, Dauvin J, Tarkhnishvili D, Chaladze G, Tuerkay M, Legakis A, Peregovits L, Gudmundsson G, Ólafsson E, Lysaght L, Galil B, Raimondo F, Domina G, Stoch F, Minelli A, Spungis V, Budrys E, Olenin S, Turpel A, Walisch T, Krpach V, Gambin M, Ungureanu L, Karaman G, Kleukers R, Stur E, Aagaard K, Valland N, Moen T, Bogdanowicz W, Tykarski P, Węsławski J, Kędra M, M. de Frias Martins A, Abreu A, Silva R, Medvedev S, Ryss A, Šimić S, Marhold K, Stloukal E, Tome D, Ramos M, Valdés B, Pina F, Kullander S, Telenius A, Gonseth Y, Tschudin P, Sergeyeva O, Vladymyrov V, Rizun V, Raper C, Lear D, Stoev P, Penev L, Rubio A, Backeljau T, Saarenmaa H, Ulenberg S (2015) PESI - a taxonomic backbone for Europe. Biodiversity Data Journal 3: e5848. https://doi.org/10.3897/BDJ.3.e5848
de Jong, Yde,University of Amsterdam - Faculty of Science, Amsterdam, Netherlands; Kouwenberg, Juliana,University of Amsterdam - Faculty of Science, Amsterdam, Netherlands; Boumans, Louis,University of Oslo - Natural History Museum, Oslo, Norway; Hussey, Charles,The Natural History Museum, London, United Kingdom; Hyam, Roger,Royal Botanic Garden Edinburgh, Edinburgh, United Kingdom; Nicolson, Nicola,Royal Botanic Gardens, Kew, London, United Kingdom; Kirk, Paul,Royal Botanic Gardens, Kew, London, United Kingdom; Paton, Alan,Royal Botanic Gardens, Kew, London, United Kingdom; Michel, Ellinor,Natural History Museum, London, United Kingdom; (2017)Global Nomenclator Architecture (GNOMA) meeting on the contribution of nomenclators to the Global Names Architecture (GNA). ZooBank provisioning meeting on defining strategies for the uploading of ZooBank, especially on ...Dataset
-
Supplementary material 29 from: de Jong Y, Kouwenberg J, Boumans L, Hussey C, Hyam R, Nicolson N, Kirk P, Paton A, Michel E, Guiry M, Boegh P, Pedersen H, Enghoff H, von Raab-Straube E, Güntsch A, Geoffroy M, Müller A, Kohlbecker A, Berendsohn W, Appeltans W, Arvanitidis C, Vanhoorne B, Declerck J, Vandepitte L, Hernandez F, Nash R, Costello M, Ouvrard D, Bezard-Falgas P, Bourgoin T, Wetzel F, Glöckler F, Korb G, Ring C, Hagedorn G, Häuser C, Aktaç N, Asan A, Ardelean A, Borges P, Dhora D, Khachatryan H, Malicky M, Ibrahimov S, Tuzikov A, De Wever A, Moncheva S, Spassov N, Chobot K, Popov A, Boršić I, Sfenthourakis S, Kõljalg U, Uotila P, Olivier G, Dauvin J, Tarkhnishvili D, Chaladze G, Tuerkay M, Legakis A, Peregovits L, Gudmundsson G, Ólafsson E, Lysaght L, Galil B, Raimondo F, Domina G, Stoch F, Minelli A, Spungis V, Budrys E, Olenin S, Turpel A, Walisch T, Krpach V, Gambin M, Ungureanu L, Karaman G, Kleukers R, Stur E, Aagaard K, Valland N, Moen T, Bogdanowicz W, Tykarski P, Węsławski J, Kędra M, M. de Frias Martins A, Abreu A, Silva R, Medvedev S, Ryss A, Šimić S, Marhold K, Stloukal E, Tome D, Ramos M, Valdés B, Pina F, Kullander S, Telenius A, Gonseth Y, Tschudin P, Sergeyeva O, Vladymyrov V, Rizun V, Raper C, Lear D, Stoev P, Penev L, Rubio A, Backeljau T, Saarenmaa H, Ulenberg S (2015) PESI - a taxonomic backbone for Europe. Biodiversity Data Journal 3: e5848. https://doi.org/10.3897/BDJ.3.e5848
de Jong, Yde,University of Amsterdam - Faculty of Science, Amsterdam, Netherlands; Kouwenberg, Juliana,University of Amsterdam - Faculty of Science, Amsterdam, Netherlands; Boumans, Louis,University of Oslo - Natural History Museum, Oslo, Norway; Hussey, Charles,The Natural History Museum, London, United Kingdom; Hyam, Roger,Royal Botanic Garden Edinburgh, Edinburgh, United Kingdom; Nicolson, Nicola,Royal Botanic Gardens, Kew, London, United Kingdom; Kirk, Paul,Royal Botanic Gardens, Kew, London, United Kingdom; Paton, Alan,Royal Botanic Gardens, Kew, London, United Kingdom; Michel, Ellinor,Natural History Museum, London, United Kingdom; (2018)Also available at: http://vbrant.eu/content/d43-design-robust-servicesDataset
-
Supplementary material 16 from: de Jong Y, Kouwenberg J, Boumans L, Hussey C, Hyam R, Nicolson N, Kirk P, Paton A, Michel E, Guiry M, Boegh P, Pedersen H, Enghoff H, von Raab-Straube E, Güntsch A, Geoffroy M, Müller A, Kohlbecker A, Berendsohn W, Appeltans W, Arvanitidis C, Vanhoorne B, Declerck J, Vandepitte L, Hernandez F, Nash R, Costello M, Ouvrard D, Bezard-Falgas P, Bourgoin T, Wetzel F, Glöckler F, Korb G, Ring C, Hagedorn G, Häuser C, Aktaç N, Asan A, Ardelean A, Borges P, Dhora D, Khachatryan H, Malicky M, Ibrahimov S, Tuzikov A, De Wever A, Moncheva S, Spassov N, Chobot K, Popov A, Boršić I, Sfenthourakis S, Kõljalg U, Uotila P, Olivier G, Dauvin J, Tarkhnishvili D, Chaladze G, Tuerkay M, Legakis A, Peregovits L, Gudmundsson G, Ólafsson E, Lysaght L, Galil B, Raimondo F, Domina G, Stoch F, Minelli A, Spungis V, Budrys E, Olenin S, Turpel A, Walisch T, Krpach V, Gambin M, Ungureanu L, Karaman G, Kleukers R, Stur E, Aagaard K, Valland N, Moen T, Bogdanowicz W, Tykarski P, Węsławski J, Kędra M, M. de Frias Martins A, Abreu A, Silva R, Medvedev S, Ryss A, Šimić S, Marhold K, Stloukal E, Tome D, Ramos M, Valdés B, Pina F, Kullander S, Telenius A, Gonseth Y, Tschudin P, Sergeyeva O, Vladymyrov V, Rizun V, Raper C, Lear D, Stoev P, Penev L, Rubio A, Backeljau T, Saarenmaa H, Ulenberg S (2015) PESI - a taxonomic backbone for Europe. Biodiversity Data Journal 3: e5848. https://doi.org/10.3897/BDJ.3.e5848
de Jong, Yde,University of Amsterdam - Faculty of Science, Amsterdam, Netherlands; Kouwenberg, Juliana,University of Amsterdam - Faculty of Science, Amsterdam, Netherlands; Boumans, Louis,University of Oslo - Natural History Museum, Oslo, Norway; Hussey, Charles,The Natural History Museum, London, United Kingdom; Hyam, Roger,Royal Botanic Garden Edinburgh, Edinburgh, United Kingdom; Nicolson, Nicola,Royal Botanic Gardens, Kew, London, United Kingdom; Kirk, Paul,Royal Botanic Gardens, Kew, London, United Kingdom; Paton, Alan,Royal Botanic Gardens, Kew, London, United Kingdom; Michel, Ellinor,Natural History Museum, London, United Kingdom; (2017)Report on the contributions to the set up of a Global Name ArchitectureDataset